#include <stdlib.h>#include <ctype.h>#include <assert.h>#include <time.h>#include "clustal-omega.h"#include "ktuple_pair.h"#include "pair_dist.h"#include "progress.h"#include "util.h"
Include dependency graph for pair_dist.c:
Functions | |
| int | PairDistances (symmatrix_t **distmat, mseq_t *mseq, int pairdist_type, bool bPercID, int istart, const unsigned long int iend, int jstart, const unsigned long int jend, char *fdist_in, char *fdist_out) |
| compute or read precomputed distances for given sequences More... | |
Function Documentation
◆ PairDistances()
| int PairDistances | ( | symmatrix_t ** | distmat, |
| mseq_t * | mseq, | ||
| int | pairdist_type, | ||
| bool | bPercID, | ||
| int | istart, | ||
| const unsigned long int | iend, | ||
| int | jstart, | ||
| const unsigned long int | jend, | ||
| char * | fdist_in, | ||
| char * | fdist_out | ||
| ) |
compute or read precomputed distances for given sequences
- Parameters
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[out] distmat Distances will be written to this matrix. will be allocated here as well. Caller must free with FreeSymMatrix() [in] mseq Distances will be computed for these sequences [in] pairdist_type Type of pairwise distance comparison [in] fdist_in If not NULL, sequences will be written from this file instead of computing them [in] istart Compute distances for sequences i:j, i>=istart, i<j. Usually 0. [in] iend Compute distances for sequences i:j, i<iend, i<j Usually mseq->nseqs. [in] jstart Compute distances for sequences i:j, j>=jstart, i<j Usually 0. [in] jend Compute distances for sequences i:j, j<iend, i<j Usually mseq->nseqs. [in] fdist_out If not NULL, distances will be written to this files
