A cluster model for cell death, where a cluster is indexed by a tuple (L, X, Y, Z), where L represents FasL and X, Y, and Z are three posited forms of Fas, denoting closed, open and unstable, and open and stable, i.e., active and signaling, receptors, respectively [Feliu, Wiuf].
i1 : clusterModelCellDeath()
o1 = Y+Z-->2Z
Y+Z+L-->2Z+L
2Y-->Y+Z
2Y-->2Z
2Y+L-->Y+Z+L
2Y+L-->2Z+L
Y+2Z-->3Z
Y+2Z+L-->3Z+L
2Y+Z-->Y+2Z
2Y+Z-->3Z
2Y+Z+L-->Y+2Z+L
2Y+Z+L-->3Z+L
3Y-->Y+2Z
3Y-->3Z
3Y-->2Y+Z
3Y+L-->Y+2Z+L
3Y+L-->3Z+L
3Y+L-->2Y+Z+L
o1 : ReactionNetwork
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In this example n=m=3. To rename species, use substitute(ReactionNetwork,List).
The object clusterModelCellDeath is a method function.